Bioconductor Batch Effect Correction

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813

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batch effect limma batch effect correction

updated 5.3 years ago by Gordon Smyth 51k • written 5.3 years ago by ginlucks • 0

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780

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pvca batch effect batch effect correction

5.6 years ago Sebastian Hesse ▴ 70

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1.1k

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batch effect correction sva proteomics

5.6 years ago Sebastian Hesse ▴ 70

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1.3k

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deseq2 interactions batch effect correction grouping variable

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by mat.lesche ▴ 90

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2.1k

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scan.upc upc normalization batch effect correction

updated 5.9 years ago by Stephen Piccolo ▴ 590 • written 5.9 years ago by y.li.1 • 0

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1.7k

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Limma differential gene expression batch effect correction covariates

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by abelsousa • 0

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3.3k

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DESeq2 sva svaseq batch effect correction

6.4 years ago L_K • 0

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1.3k

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sva svaseq batch effect batch effects batch effect correction

6.9 years ago vedran.franke • 0

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1.1k

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limma voom Batch Effect Correction

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Dario Strbenac ★ 1.5k

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Comment: limma comparison for small sample size and how to get covariance matrix by Gordon Smyth 51k

Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…

Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…

Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…

Answer: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.

Answer: XCMS2 of orbitrap data by Elodie • 0

Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…

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Answer: EPIC array hg38 annotation?

Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

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